Assessing imputation accuracy using a 15k low density panel in a multi-breed New Zealand sheep population (#116)
Imputation has enabled genomic selection in
commercial livestock, taking advantage of a more cost effective Low Density (LD)
panel, increasing the number of genotyped animals and hence adoption. A 5K LD
panel has been employed commercially in New Zealand. This study investigated the accuracy of imputation
using a new 15K panel being developed by the International Sheep Genomics
Consortium in four scenarios across two multi-breed New Zealand sheep
populations. The prototype panel resulted in higher values of imputation
accuracy compared with the current LD panel (5K), which will benefit the
implementation of genomic selection for the sheep industry in New Zealand.